Integrating functional genomic information into the Saccharomyces Genome Database
Open Access
- 1 January 2000
- journal article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 28 (1) , 77-80
- https://doi.org/10.1093/nar/28.1.77
Abstract
The Saccharomyces Genome Database (SGD) stores and organizes information about the nearly 6200 genes in the yeast genome. The information is organized around the ‘locus page’ and directs users to the detailed information they seek. SGD is endeavoring to integrate the existing information about yeast genes with the large volume of data generated by functional analyses that are beginning to appear in the literature and on web sites. New features will include searches of systematic analyses and Gene Summary Paragraphs that succinctly review the literature for each gene. In addition to current information, such as gene product and phenotype descriptions, the new locus page will also describe a gene product’s cellular process, function and localization using a controlled vocabulary developed in collaboration with two other model organism databases. We describe these developments in SGD through the newly reorganized locus page. The SGD is accessible via the WWW at http://genome-www. stanford. edu/Saccharomyces/Keywords
This publication has 15 references indexed in Scilit:
- Systematic changes in gene expression patterns following adaptive evolution in yeastProceedings of the National Academy of Sciences, 1999
- The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999Nucleic Acids Research, 1999
- The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional dataNucleic Acids Research, 1999
- Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structureNucleic Acids Research, 1999
- GenBankNucleic Acids Research, 1999
- The FlyBase Database of the Drosophila Genome Projects and community literatureNucleic Acids Research, 1999
- MIPS: a database for genomes and protein sequencesNucleic Acids Research, 1999
- Cluster analysis and display of genome-wide expression patternsProceedings of the National Academy of Sciences, 1998
- Comprehensive Identification of Cell Cycle–regulated Genes of the YeastSaccharomyces cerevisiaeby Microarray HybridizationMolecular Biology of the Cell, 1998
- Genetic and physical maps of Saccharomyces cerevisiaeNature, 1997