Entropy-driven DNA denaturation
- 1 January 1993
- journal article
- research article
- Published by American Physical Society (APS) in Physical Review E
- Vol. 47 (1) , R44-R47
- https://doi.org/10.1103/physreve.47.r44
Abstract
We present a nonlinear dynamical model for DNA denaturation which includes cooperativity effects through anharmonic nearest-neighbor stacking interactions. Transfer-integral calculations show that this one-dimensional model, without including long-range interactions, exhibits a sharp denaturation reminiscent of a first-order transition at a temperature lower than a similar model with harmonic coupling. Self-consistent phonon calculations point out the essential role of nonlinear effects in the mechanism.Keywords
This publication has 19 references indexed in Scilit:
- Characterization of base-pair opening in deoxynucleotide duplexes using catalyzed exchange of the imino protonPublished by Elsevier ,2004
- Thermal denaturation of DNA molecules: A comparison of theory with experimentPublished by Elsevier ,2002
- Large-amplitude nonlinear motions in proteinsPhysical Review Letters, 1992
- Comment on ‘‘DNA solitons with realistic parameters’’Physical Review A, 1990
- Analysis of the breakdown of continuum and semidiscrete approximation of a nonlinear model for the DNA double helixPhysical Review A, 1990
- Statistical mechanics of a nonlinear model for DNA denaturationPhysical Review Letters, 1989
- Principles of Nucleic Acid StructurePublished by Springer Nature ,1984
- Nature of the open state in long polynucleotide double helices: possibility of soliton excitations.Proceedings of the National Academy of Sciences, 1980
- Phase Transitions in One Dimension and the Helix—Coil Transition in Polyamino AcidsThe Journal of Chemical Physics, 1966
- Sur L'intégrale de Configuration Pour Les Systèmes De Particules À Une DimensionPhysica, 1950