The nicking homing endonuclease I-BasI is encoded by a group I intron in the DNA polymerase gene of the Bacillus thuringiensis phage Bastille
Open Access
- 15 June 2003
- journal article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 31 (12) , 3071-3077
- https://doi.org/10.1093/nar/gkg433
Abstract
Here we describe the discovery of a group I intron in the DNA polymerase gene of Bacillus thuringiensis phage Bastille. Although the intron insertion site is identical to that of the Bacillus subtilis phages SPO1 and SP82 introns, the Bastille intron differs from them substantially in primary and secondary structure. Like the SPO1 and SP82 introns, the Bastille intron encodes a nicking DNA endonuclease of the H‐N‐H family, I‐BasI, with a cleavage site identical to that of the SPO1‐encoded enzyme I‐HmuI. Unlike I‐HmuI, which nicks both intron‐minus and intron‐plus DNA, I‐BasI cleaves only intron‐minus alleles, which is a characteristic of typical homing endonucleases. Interestingly, the C‐terminal portions of these H‐N‐H phage endonucleases contain a conserved sequence motif, the intron‐encoded endonuclease repeat motif (IENR1) that also has been found in endonucleases of the GIY‐YIG family, and which likely comprises a small DNA‐binding module with a globular ββααβ fold, suggestive of module shuffling between different homing endonuclease families.Keywords
This publication has 33 references indexed in Scilit:
- Prokaryotic DNA polymerase I: evolution, structure, and “base flipping” mechanism for nucleotide selectionJournal of Molecular Biology, 2001
- Protein secondary structure prediction based on position-specific scoring matrices 1 1Edited by G. Von HeijneJournal of Molecular Biology, 1999
- I- Ppo I and I- Cre I homing site sequence degeneracy determined by random mutagenesis and sequential in vitro enrichment 1 1Edited by G. SmithJournal of Molecular Biology, 1998
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programsNucleic Acids Research, 1997
- Homing endonucleases: keeping the house in orderNucleic Acids Research, 1997
- Two-domain structure of the td intron-encoded endonuclease I-TevI correlates with the two-domain configuration of the homing siteJournal of Molecular Biology, 1997
- Beyond Homing: Competition between Intron Endonucleases Confers a Selective Advantage on Flanking Genetic MarkersCell, 1996
- Evolution of T4-related phagesVirus Genes, 1995
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceNucleic Acids Research, 1994
- Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysisJournal of Molecular Biology, 1990