Amino acid sequence and homology modeling of obtustatin, a novel non‐RGD‐containing short disintegrin isolated from the venom ofVipera lebetina obtusa
- 1 February 2003
- journal article
- research article
- Published by Wiley in Protein Science
- Vol. 12 (2) , 366-371
- https://doi.org/10.1110/ps.0230203
Abstract
Disintegrins represent a group of cysteine‐rich peptides occurring in Crotalidae and Viperidae snake venoms, and are potent antagonists of several integrin receptors. A novel disintegrin, obtustatin, was isolated from the venom of the Vipera lebetina obtusa viper, and represents the first potent and selective inhibitor of the binding of integrin α1β1 to collagen IV. The primary structure of obtustatin contains 41 amino acids and is the shortest disintegrin described to date. Obtustatin shares the pattern of cysteines of other short disintegrins. However, in contrast to known short disintegrins, the integrin‐binding loop of obtustatin is two residues shorter and does not express the classical RGD sequence. Using synthetic peptides, a KTS motif was identified as the integrin‐binding sequence. A three‐dimensional model of obtustatin, built by homology‐modeling structure calculations using different templates and alignments, strongly indicates that the novel KTS motif may reside at the tip of a flexible loop.Keywords
This publication has 37 references indexed in Scilit:
- Crystal Structure of the Extracellular Segment of Integrin αVβ3 in Complex with an Arg-Gly-Asp LigandScience, 2002
- Torsion angle dynamics for NMR structure calculation with the new program DyanaJournal of Molecular Biology, 1997
- Homology modeling using simulated annealing of restrained molecular dynamics and conformational search calculations with CONGEN: Application in predicting the three-dimensional structure of murine homeodomain Msx-1Protein Science, 1997
- Importance of the structure of the RGD‐containing loop in the disintegrins echistatin and eristostatin for recognition of αIIbβ3 and αvβ3 integrinsFEBS Letters, 1996
- Simulated annealing with restrained molecular dynamics using CONGEN: Energy refinement of the NMR solution structures of epidermal and type‐α transforming growth factorsProtein Science, 1996
- Comparative Protein Modelling by Satisfaction of Spatial RestraintsJournal of Molecular Biology, 1993
- Grid positioning independence and the reduction of self‐energy in the solution of the Poisson—Boltzmann equationJournal of Computational Chemistry, 1993
- Assignment of all four disulfide Bridges in echistatinProtein Journal, 1993
- The Nuclear Magnetic Resonance Solution Structure of Flavoridin, an Antagonist of the Platelet GP IIb-IIIa ReceptorJournal of Molecular Biology, 1993
- The disulfide bridge pattern of snake venom disintegrins, flavoridin and echistatinFEBS Letters, 1992