BioMart Central Portal: an open database network for the biological community
Open Access
- 1 January 2011
- journal article
- research article
- Published by Oxford University Press (OUP) in Database: The Journal of Biological Databases and Curation
- Vol. 2011, bar041
- https://doi.org/10.1093/database/bar041
Abstract
BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. Anybody can contribute an independently maintained resource to the Central Portal, allowing it to be exposed to and shared with the research community, and linking it with the other resources in the portal. Users can take advantage of the common interface to quickly utilize different sources without learning a new system for each. The system also simplifies cross-database searches that might otherwise require several complicated steps. Several integrated tools streamline common tasks, such as converting between ID formats and retrieving sequences. The combination of a wide variety of databases, an easy-to-use interface, robust programmatic access and the array of tools make Central Portal a one-stop shop for biological data querying. Here, we describe the structure of Central Portal and show example queries to demonstrate its capabilities. Database URL: http://central.biomart.org.Keywords
This publication has 30 references indexed in Scilit:
- The Reactome BioMartDatabase: The Journal of Biological Databases and Curation, 2011
- International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics dataDatabase: The Journal of Biological Databases and Curation, 2011
- SigReannot-mart: a query environment for expression microarray probe re-annotationsDatabase: The Journal of Biological Databases and Curation, 2011
- Data mining using the Catalogue of Somatic Mutations in Cancer BioMartDatabase: The Journal of Biological Databases and Curation, 2011
- GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycleDatabase: The Journal of Biological Databases and Curation, 2010
- The Proteomics Identifications database: 2010 updateNucleic Acids Research, 2009
- Cildb: a knowledgebase for centrosomes and ciliaDatabase: The Journal of Biological Databases and Curation, 2009
- The vertebrate genome annotation (Vega) databaseNucleic Acids Research, 2007
- From genomics to chemical genomics: new developments in KEGGNucleic Acids Research, 2006
- KEGG: Kyoto Encyclopedia of Genes and GenomesNucleic Acids Research, 2000