STUDIES ON HYDROGEN BONDS: Part IV. Proposed Working Criteria for Assessing Qualitative Strength of Hydrogen Bonds*
- 12 January 2009
- journal article
- research article
- Published by Wiley in International Journal of Peptide and Protein Research
- Vol. 17 (4) , 401-411
- https://doi.org/10.1111/j.1399-3011.1981.tb02007.x
Abstract
The data obtained in the earlier parts of this series for the donor and acceptor end parameters of N-H.cntdot..cntdot..cntdot.O and O-H.cntdot..cntdot..cntdot.O H bonds were utilized to obtain a qualitative working criterion to classify the H-bonds into 3 categories: very good (VG), moderately good (MG) and weak (W). The general distribution curves for all the 4 parameters are nearly of the Gaussian type. Assuming that the VG H-bonds lie between 0 and .+-. 1 .sigma., MG H-bonds between .+-. 1 .sigma. and .+-. 2 .sigma., W H-bonds beyond .+-. 2 .sigma. (where .sigma. is the SD), suitable cut-off limits for classifying the H-bonds in the 3 categories were derived. These limits are used to get VG and MG ranges for the 4 parameters 1 and .theta. (at the donor end) and .zeta. and .xi. (at the acceptor end). The qualitative strength of a H-bond is decided by the cumulative application of the criteria to all the 4 parameters. The criterion was further applied to some practical examples in conformational studies such as .alpha.-helix and can be used for obtaining suitable location of H atoms of form good H-bonds. An empirical approach to the energy of H-bonds in the 3 categories was also presented.Keywords
This publication has 34 references indexed in Scilit:
- The crystal and molecular structure of 2,2';5,6-Di-O-isopropylidene-2-O-hydroxymethyl-L-gulonolactoneActa Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 1977
- The crystal and molecular structure of 1-p-tolyl-4-(α-D-erythrofuranosyl)imidazoline-2-thioneActa Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 1977
- 3-Ammonio-l,6-anhydro-3-deoxy-β-D-glucopyranose chloride monohydrateActa Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 1977
- Changes in conformation and bonding of D-isoascorbic acid by ionization. The crystal structure of sodium D-isoascorbate monohydrateActa Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 1977
- An X-ray and neutron diffraction study of aqua(L-glutamato)cadmium(II) hydrateActa Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 1977
- The crystal and molecular structure of 2-thiouridineActa Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 1977
- N-Acetyl-DL-tryptophan-N-methylamideActa Crystallographica Section B: Structural Science, Crystal Engineering and Materials, 1977
- On the geometry of O–H...O hydrogen bondsActa Crystallographica Section A, 1976
- Potential functions for hydrogen bond interactions II. Formulation of an empirical potential functionBiochimica et Biophysica Acta (BBA) - Protein Structure, 1970
- Potential functions for hydrogen bond interactions I. A modified lippincott-schroeder potential function for NH⋯O interaction between peptide groupsBiochimica et Biophysica Acta (BBA) - Protein Structure, 1970