tPatternHunter: gapped, fast and sensitive translated homology search
Open Access
- 16 September 2004
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 21 (4) , 542-544
- https://doi.org/10.1093/bioinformatics/bti035
Abstract
Summary: New ideas, spaced seeds and gapped alignment before 6-frame translation are implemented for translated homology search in tPatternHunter. The new software compares favorably with tBLASTx. Availability: The software is free to academics at http://www.bioinformaticssolutions.com/downloads/ph-academic/ Contact:bma@csd.uwo.caKeywords
This publication has 6 references indexed in Scilit:
- PATTERNHUNTER II: HIGHLY SENSITIVE AND FAST HOMOLOGY SEARCHJournal of Bioinformatics and Computational Biology, 2004
- HOMOLOGY SEARCH METHODSPublished by World Scientific Pub Co Pte Ltd ,2004
- PatternHunter: faster and more sensitive homology searchBioinformatics, 2002
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programsNucleic Acids Research, 1997
- Basic Local Alignment Search ToolJournal of Molecular Biology, 1990
- Basic local alignment search toolJournal of Molecular Biology, 1990