Structure, Interaction, Dynamics and Solvent Effects on the DNA-EcoRI complex in Aqueous Solution from Molecular Dynamics Simulation
Open Access
- 31 October 1999
- journal article
- research article
- Published by Elsevier in Biophysical Journal
- Vol. 77 (4) , 1782-1800
- https://doi.org/10.1016/s0006-3495(99)77024-4
Abstract
No abstract availableKeywords
This publication has 47 references indexed in Scilit:
- Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator 1 1Edited by B. HonigJournal of Molecular Biology, 1998
- All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of ProteinsThe Journal of Physical Chemistry B, 1998
- Selection of non-specific DNA cleavage sites by the type IC restriction endonuclease EcoR124IJournal of Molecular Biology, 1997
- Dynamic Contributions to the DNA Binding Entropy of theEcoRI andEcoRV Restriction EndonucleasesJournal of Molecular Biology, 1996
- Structure, Thermodynamics and Cooperativity of the Glucocorticoid Receptor DNA-binding Domain in Complex with Different Response Elements. Molecular Dynamics Simulation and Free Energy Perturbation StudiesJournal of Molecular Biology, 1995
- Hydrostatic Pressure Reverses Osmotic Pressure Effects on the Specificity of EcoRI-DNA InteractionsBiochemistry, 1994
- Determination of the Nuclear Magnetic Resonance Solution Structure of an Antennapedia Homeodomain-DNA ComplexJournal of Molecular Biology, 1993
- Deformable stochastic boundaries in molecular dynamicsThe Journal of Chemical Physics, 1983
- Comparison of simple potential functions for simulating liquid waterThe Journal of Chemical Physics, 1983
- CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsJournal of Computational Chemistry, 1983