Protein Structure Refinement Using 13Cα Chemical Shift Tensors
- 5 January 2009
- journal article
- research article
- Published by American Chemical Society (ACS) in Journal of the American Chemical Society
- Vol. 131 (3) , 985-992
- https://doi.org/10.1021/ja804041p
Abstract
We have obtained the 13Cα chemical shift tensors for each amino acid in the protein GB1. We then developed a CST force field and incorporated this into the Xplor-NIH structure determination program. GB1 structures obtained by using CST restraints had improved precision over those obtained in the absence of CST restraints and were also more accurate. When combined with isotropic chemical shifts, distance, and vector angle restraints, the root-mean squared error with respect to existing X-ray structures was better than ∼1.0 Å. These results are of broad general interest since they show that chemical shift tensors can be used in protein structure refinement, improving both structural accuracy and precision, opening up the way to accurate de novo structure determination.Keywords
This publication has 63 references indexed in Scilit:
- Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMRProceedings of the National Academy of Sciences, 2008
- Crystal Polymorphism of Protein GB1 Examined by Solid-State NMR Spectroscopy and X-ray DiffractionThe Journal of Physical Chemistry B, 2007
- Solid‐State Protein‐Structure Determination with Proton‐Detected Triple‐Resonance 3D Magic‐Angle‐Spinning NMR SpectroscopyAngewandte Chemie International Edition in English, 2007
- Protein structure determination from NMR chemical shiftsProceedings of the National Academy of Sciences, 2007
- Membrane-Bound Conformation and Topology of the Antimicrobial Peptide Tachyplesin I by Solid-State NMRBiochemistry, 2006
- Heterogeneity and Inaccuracy in Protein Structures Solved by X-Ray CrystallographyStructure, 2004
- Cross polarization in the tilted frame: assignment and spectral simplification in heteronuclear spin systemsMolecular Physics, 1998
- NMRPipe: A multidimensional spectral processing system based on UNIX pipesJournal of Biomolecular NMR, 1995
- Protein Structure Refinement and Prediction via NMR Chemical Shifts and Quantum ChemistryJournal of the American Chemical Society, 1995
- Minuit - a system for function minimization and analysis of the parameter errors and correlationsComputer Physics Communications, 1975