Apollo: a community resource for genome annotation editing
- 13 May 2009
- journal article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 25 (14) , 1836-1837
- https://doi.org/10.1093/bioinformatics/btp314
Abstract
Summary: Apollo is a genome annotation-editing tool with an easy to use graphical interface. It is a component of the GMOD project, with ongoing development driven by the community. Recent additions to the software include support for the generic feature format version 3 (GFF3), continuous transcriptome data, a full Chado database interface, integration with remote services for on-the-fly BLAST and Primer BLAST analyses, graphical interfaces for configuring user preferences and full undo of all edit operations. Apollo's user community continues to grow, including its use as an educational tool for college and high-school students. Availability: Apollo is a Java application distributed under a free and open source license. Installers for Windows, Linux, Unix, Solaris and Mac OS X are available at http://apollo.berkeleybop.org, and the source code is available from the SourceForge CVS repository at http://gmod.cvs.sourceforge.net/gmod/apollo. Contact: elee@berkeleybop.orgKeywords
This publication has 11 references indexed in Scilit:
- nGASP – the nematode genome annotation assessment projectBMC Bioinformatics, 2008
- A Chado case study: an ontology-based modular schema for representing genome-associated biological informationBioinformatics, 2007
- EGASP: the human ENCODE Genome Annotation Assessment ProjectGenome Biology, 2006
- The Sequence Ontology: a tool for the unification of genome annotationsGenome Biology, 2005
- The UCSC Genome Browser DatabaseNucleic Acids Research, 2003
- The Generic Genome Browser: A Building Block for a Model Organism System DatabaseGenome Research, 2002
- The FlyBase database of the Drosophila genome projects and community literatureNucleic Acids Research, 2002
- The Genome Sequence of Drosophila melanogasterScience, 2000
- Basic Local Alignment Search ToolJournal of Molecular Biology, 1990
- Basic local alignment search toolJournal of Molecular Biology, 1990