REFINEMENT: A search framework for the identification of interferon-responsive elements in DNA sequences – a case study with ISRE and GAS
- 1 April 2006
- journal article
- research article
- Published by Elsevier in Computational Biology and Chemistry
- Vol. 30 (2) , 134-147
- https://doi.org/10.1016/j.compbiolchem.2006.01.002
Abstract
No abstract availableKeywords
This publication has 37 references indexed in Scilit:
- Integrating regulatory motif discovery and genome-wide expression analysisProceedings of the National Academy of Sciences, 2003
- Transcriptional Profiling of Interferon Regulatory Factor 3 Target Genes: Direct Involvement in the Regulation of Interferon-Stimulated GenesJournal of Virology, 2002
- A unique ISRE, in the TATA-less human Isg20 promoter, confers IRF-1-mediated responsiveness to both interferon type I and type IINucleic Acids Research, 2000
- Interleukin-12 Induces Expression of Interferon Regulatory Factor-1 via Signal Transducer and Activator of Transcription-4 in Human T Helper Type 1 CellsJournal of Biological Chemistry, 1999
- Characterization of the 5′-flanking region of the human RNA-specific adenosine deaminase ADAR1 gene and identification of an interferon-inducible ADAR1 promoterGene, 1999
- IP-10 Gene Transcription by Virus in Astrocytes Requires Cooperation of ISRE with Adjacent κB Site but Not IRF-1 or Viral TranscriptionJournal of Interferon & Cytokine Research, 1998
- Profile hidden Markov models.Bioinformatics, 1998
- Cooperative Role of Interferon Regulatory Factor 1 and p91 (STAT1) Response Elements in Interferon-γ-inducible Expression of Human Indoleamine 2,3-Dioxygenase GeneJournal of Biological Chemistry, 1996
- Unsupervised learning of multiple motifs in biopolymers using expectation maximizationMachine Learning, 1995
- A factor induced by differentiation signals in cells of the macrophage lineage binds to the gamma interferon activation site.Molecular and Cellular Biology, 1994