Evaluation of 11 PCR Assays for Species-Level Identification of Campylobacter jejuni and Campylobacter coli
- 1 January 2003
- journal article
- research article
- Published by American Society for Microbiology in Journal of Clinical Microbiology
- Vol. 41 (1) , 330-336
- https://doi.org/10.1128/jcm.41.1.330-336.2003
Abstract
We examined the sensitivity and specificity of 11 PCR assays described for the species identification of Campylobacter jejuni and Campylobacter coli by using 111 type, reference, and field strains of C. jejuni , C. coli , and Campylobacter lari . For six assays, an additional 21 type strains representing related Campylobacter , Arcobacter , and Helicobacter species were also included. PCR tests were initially established in the laboratory by optimizing conditions with respect to five type and reference strains of C. jejuni , C. coli , and C. lari . One PCR test for C. coli failed to give appropriate results during this initial setup phase and was not evaluated further. The remaining 10 assays were used to examine heated lysate and purified DNA templates as appropriate of well-characterized type, reference, and field strains of C. jejuni ( n = 62), C. coli ( n = 34), and C. lari ( n = 15). The tests varied considerably in their sensitivity and specificity for their respective target species. No assay was found to be 100% sensitive and/or specific for all C. jejuni strains tested, but four assays for C. coli gave appropriate responses for all strains examined. Between one and six strains of C. jejuni gave amplicons in four of seven C. jejuni PCR tests only where purified DNA was used as the template; corresponding results were seen with one strain of C. coli in each of three assays for the latter species. Our findings indicate that a polyphasic strategy for PCR-based identification should be used to identify C. jejuni and C. coli strains. The data may assist laboratories in selecting assays suited for their needs and in designing evaluations of future PCR tests aimed to identify these species.Keywords
This publication has 46 references indexed in Scilit:
- Allelic Diversity and Recombination in Campylobacter jejuniJournal of Bacteriology, 2001
- Identification of taxonomic and epidemiological relationships amongCampylobacterspecies by numerical analysis of AFLP profilesFEMS Microbiology Letters, 2000
- High-resolution genomic fingerprinting ofCampylobacter jejuniandCampylobacter coliby analysis of amplified fragment length polymorphismsFEMS Microbiology Letters, 1999
- In vitro genotypic variation ofCampylobacter colidocumented by pulsed-field gel electrophoretic DNA profiling: implications for epidemiological studiesFEMS Microbiology Letters, 1998
- Campylobacter hyoilei Alderton et al. 1995 and Campylobacter coli Veron and Chatelain 1973 Are Subjective SynonymsInternational Journal of Systematic and Evolutionary Microbiology, 1997
- General problems associated with diagnostic applications of amplification methodsJournal of Microbiological Methods, 1995
- How to optimize, modify, and/or troubleshoot PCR reactionsClinical Immunology Newsletter, 1993
- Campylobacter jejuni: Specific oligonucleotides and DNA probes for use in polymerase chain reaction-based diagnosisFEMS Immunology & Medical Microbiology, 1993
- Evaluation of the polymerase chain reaction for detecting the urease C gene of Helicobacter pylori in gastric biopsy samples and dental plaqueJournal of Medical Microbiology, 1993
- Quality control of the polymerase chain reactionReviews in Medical Virology, 1993