Assembly information services in the European Nucleotide Archive
Open Access
- 8 November 2013
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 42 (D1) , D38-D43
- https://doi.org/10.1093/nar/gkt1082
Abstract
The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the world public domain nucleotide sequence data output. ENA content covers a spectrum of data types including raw reads, assembly data and functional annotation. ENA has faced a dramatic growth in genome assembly submission rates, data volumes and complexity of datasets. This has prompted a broad reworking of assembly submission services, for which we now reach the end of a major programme of work and many enhancements have already been made available over the year to components of the submission service. In this article, we briefly review ENA content and growth over 2013, describe our rapidly developing services for genome assembly information and outline further major developments over the last year.Keywords
This publication has 12 references indexed in Scilit:
- The Norway spruce genome sequence and conifer genome evolutionNature, 2013
- Estimating the Population Mutation Rate from ade novoAssembled Bactrian Camel Genome and Cross-Species Comparison with Dromedary ESTsJournal of Heredity, 2013
- DDBJ new system and service refactoringNucleic Acids Research, 2012
- The International Nucleotide Sequence Database CollaborationNucleic Acids Research, 2012
- The future of DNA sequence archivingGigaScience, 2012
- Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton BloomScience, 2012
- The BioSample Database (BioSD) at the European Bioinformatics InstituteNucleic Acids Research, 2011
- miRBase: integrating microRNA annotation and deep-sequencing dataNucleic Acids Research, 2010
- A high-throughput screening of genes that encode proteins transported into the endoplasmic reticulum in mammalian cellsNucleic Acids Research, 2005
- GenBankNucleic Acids Research, 2004