Achievements and new knowledge unraveled by metagenomic approaches
Open Access
- 16 September 2009
- journal article
- review article
- Published by Springer Nature in Applied Microbiology and Biotechnology
- Vol. 85 (2) , 265-276
- https://doi.org/10.1007/s00253-009-2233-z
Abstract
Metagenomics has paved the way for cultivation-independent assessment and exploitation of microbial communities present in complex ecosystems. In recent years, significant progress has been made in this research area. A major breakthrough was the improvement and development of high-throughput next-generation sequencing technologies. The application of these technologies resulted in the generation of large datasets derived from various environments such as soil and ocean water. The analyses of these datasets opened a window into the enormous phylogenetic and metabolic diversity of microbial communities living in a variety of ecosystems. In this way, structure, functions, and interactions of microbial communities were elucidated. Metagenomics has proven to be a powerful tool for the recovery of novel biomolecules. In most cases, functional metagenomics comprising construction and screening of complex metagenomic DNA libraries has been applied to isolate new enzymes and drugs of industrial importance. For this purpose, several novel and improved screening strategies that allow efficient screening of large collections of clones harboring metagenomes have been introduced.Keywords
This publication has 109 references indexed in Scilit:
- Cloning and characterization of new glycopeptide gene clusters found in an environmental DNA megalibraryProceedings of the National Academy of Sciences, 2008
- STRING 8--a global view on proteins and their functional interactions in 630 organismsNucleic Acids Research, 2008
- A comparison of random sequence reads versus 16S rDNA sequences for estimating the biodiversity of a metagenomic libraryNucleic Acids Research, 2008
- Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environmentProceedings of the National Academy of Sciences, 2008
- Microbial community gene expression in ocean surface watersProceedings of the National Academy of Sciences, 2008
- Phylogenetic classification of short environmental DNA fragmentsNucleic Acids Research, 2008
- The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotationNucleic Acids Research, 2006
- An obesity-associated gut microbiome with increased capacity for energy harvestNature, 2006
- Pfam: clans, web tools and servicesNucleic Acids Research, 2006
- Community structure and metabolism through reconstruction of microbial genomes from the environmentNature, 2004