Structural Biology by NMR: Structure, Dynamics, and Interactions
Open Access
- 26 September 2008
- journal article
- review article
- Published by Public Library of Science (PLoS) in PLoS Computational Biology
- Vol. 4 (9) , e1000168
- https://doi.org/10.1371/journal.pcbi.1000168
Abstract
The function of bio-macromolecules is determined by both their 3D structure and conformational dynamics. These molecules are inherently flexible systems displaying a broad range of dynamics on time-scales from picoseconds to seconds. Nuclear Magnetic Resonance (NMR) spectroscopy has emerged as the method of choice for studying both protein structure and dynamics in solution. Typically, NMR experiments are sensitive both to structural features and to dynamics, and hence the measured data contain information on both. Despite major progress in both experimental approaches and computational methods, obtaining a consistent view of structure and dynamics from experimental NMR data remains a challenge. Molecular dynamics simulations have emerged as an indispensable tool in the analysis of NMR data.Keywords
This publication has 104 references indexed in Scilit:
- Consistent blind protein structure generation from NMR chemical shift dataProceedings of the National Academy of Sciences, 2008
- Measurement of bond vector orientations in invisible excited states of proteinsProceedings of the National Academy of Sciences, 2007
- Protein structure determination from NMR chemical shiftsProceedings of the National Academy of Sciences, 2007
- Evaluating protein structures determined by structural genomics consortiaProteins-Structure Function and Bioinformatics, 2007
- Proton–proton Overhauser NMR spectroscopy with polypeptide chains in large structuresProceedings of the National Academy of Sciences, 2006
- Comparison of multiple Amber force fields and development of improved protein backbone parametersProteins-Structure Function and Bioinformatics, 2006
- Traditional Biomolecular Structure Determination by NMR Spectroscopy Allows for Major ErrorsPLoS Computational Biology, 2006
- Intrinsic dynamics of an enzyme underlies catalysisNature, 2005
- Intrinsically unstructured proteins and their functionsNature Reviews Molecular Cell Biology, 2005
- Empirical force fields for biological macromolecules: Overview and issuesJournal of Computational Chemistry, 2004