Novel nuclear intron‐spanning primers for Arecaceae evolutionary biology
- 1 January 2008
- journal article
- Published by Wiley in Molecular Ecology Resources
- Vol. 8 (1) , 211-214
- https://doi.org/10.1111/j.1471-8286.2007.01928.x
Abstract
In this study, 96 nuclear ‘conserved intron-scanning primers’ were screened across subfamilies the Arecaceae (palms) for potential use in research focused on palm evolutionary biology. Primers were evaluated based on their ability to amplify single polymerase chain reaction products in Arecaceae, the clarity of sequencing reads, and the interspecific variability observed. Ultimately, the results suggest that: (i) seven of the loci are likely to be suitable when comparing non-Arecaceae outgroups and Arecaceae ingroups; (ii) seven loci may be of use when comparing subfamilies of Arecaceae; and (iii) four of the loci may be of use when comparing closely related genera.Keywords
This publication has 17 references indexed in Scilit:
- A new subfamily classification of the palm family (Arecaceae): evidence from plastid DNA phylogenyBotanical Journal of the Linnean Society, 2006
- A Comparative Genomics Strategy for Targeted Discovery of Single-Nucleotide Polymorphisms and Conserved-Noncoding Sequences in Orphan CropsPlant Physiology, 2006
- Evolutionary relationships among Pinus (Pinaceae) subsections inferred from multiple low‐copy nuclear lociAmerican Journal of Botany, 2005
- From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstructionPhilosophical Transactions Of The Royal Society B-Biological Sciences, 2005
- Use of nuclear genes for phylogeny reconstruction in plantsAustralian Systematic Botany, 2004
- Nuclear DNA‐based markers for plant evolutionary biologyMolecular Ecology, 1997
- Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL.Proceedings of the National Academy of Sciences, 1996
- Gene Trees and Species Trees: Molecular Systematics as One-Character TaxonomySystematic Botany, 1992
- Basic Local Alignment Search ToolJournal of Molecular Biology, 1990
- Basic local alignment search toolJournal of Molecular Biology, 1990