Large-Scale Evidence for the Effect of the COLIA1 Sp1 Polymorphism on Osteoporosis Outcomes: The GENOMOS Study
Open Access
- 21 February 2006
- journal article
- research article
- Published by Public Library of Science (PLoS) in PLoS Medicine
- Vol. 3 (4) , e90
- https://doi.org/10.1371/journal.pmed.0030090
Abstract
Osteoporosis and fracture risk are considered to be under genetic control. Extensive work is being performed to identify the exact genetic variants that determine this risk. Previous work has suggested that a G/T polymorphism affecting an Sp1 binding site in the COLIA1 gene is a genetic marker for low bone mineral density (BMD) and osteoporotic fracture, but there have been no very-large-scale studies of COLIA1 alleles in relation to these phenotypes. Here we evaluated the role of COLIA1 Sp1 alleles as a predictor of BMD and fracture in a multicenter study involving 20,786 individuals from several European countries. At the femoral neck, the average (95% confidence interval [CI]) BMD values were 25 mg/cm2 (CI, 16 to 34 mg/cm2) lower in TT homozygotes than the other genotype groups ( p < 0.001), and a similar difference was observed at the lumbar spine; 21 mg/cm2 (CI, 1 to 42 mg/cm2), ( p = 0.039). These associations were unaltered after adjustment for potential confounding factors. There was no association with fracture overall (odds ratio [OR] = 1.01 [CI, 0.95 to 1.08]) in either unadjusted or adjusted analyses, but there was a non-significant trend for association with vertebral fracture and a nominally significant association with incident vertebral fractures in females (OR = 1.33 [CI, 1.00 to 1.77]) that was independent of BMD, and unaltered in adjusted analyses. Allowing for the inevitable heterogeneity between participating teams, this study—which to our knowledge is the largest ever performed in the field of osteoporosis genetics for a single gene—demonstrates that the COLIA1 Sp1 polymorphism is associated with reduced BMD and could predispose to incident vertebral fractures in women, independent of BMD. The associations we observed were modest however, demonstrating the importance of conducting studies that are adequately powered to detect and quantify the effects of common genetic variants on complex diseases.Keywords
This publication has 31 references indexed in Scilit:
- Local Literature Bias in Genetic Epidemiology: An Empirical Evaluation of the Chinese LiteraturePLoS Medicine, 2005
- Why Most Published Research Findings Are FalsePLoS Medicine, 2005
- In vitro functional assay of alleles and haplotypes of two -promoter SNPsBone, 2005
- Common variants at the PCOL2 and Sp1 binding sites of the COL1A1 gene and their interactive effect influence bone mineral density in CaucasiansJournal of Medical Genetics, 2004
- Genetic associations: false or true?Trends in Molecular Medicine, 2003
- Two New Single-Nucleotide Polymorphisms in the COL1A1 Upstream Regulatory Region and Their Relationship to Bone Mineral DensityJournal of Bone and Mineral Research, 2002
- The impact of genotyping error on family-based analysis of quantitative traitsEuropean Journal of Human Genetics, 2001
- Randomized trial of osteoporosis screening. Use of hormone replacement therapy and quality-of-life resultsArchives of internal medicine (1960), 1997
- Reduced bone density and osteoporosis associated with a polymorphic Sp1 binding site in the collagen type I α 1 geneNature Genetics, 1996
- The assessment of vertebral deformity: A method for use in population studies and clinical trialsOsteoporosis International, 1993