Long-range electron exchange measured in proteins by quenching of tryptophan phosphorescence.
- 1 July 1990
- journal article
- research article
- Published by Proceedings of the National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 87 (13) , 5099-5103
- https://doi.org/10.1073/pnas.87.13.5099
Abstract
Ten proteins that span a wide range of phosphorescence lifetimes were examined for sensitivity to quenching by four agents of disparate chemical nature. The results show that quenching efficiency is relatively independent of the quencher and is highly correlated with depth of burial of the phosphorescent tryptophan. The bimolecular quenching rate constants (kq) measured for the different proteins, spanning 5 orders of magnitude in kq, are found to decrease exponentially with the distance (r) of the tryptophan in angstroms from the protein surface--i.e., kq = Aexp(-r/rho), where A contains a geometrical factor dependent on tryptophan burial and surface geometry [corrected]. Theoretical analysis shows that this behavior can be expected for an electron-exchange reaction between the buried tryptophans and quenchers in solution in the rapid diffusion limit. Therefore, the results obtained provide evidence for an exponential dependence of electron-transfer rate on distance in a protein environment and evaluate the distance parameter, rho, for electron transfer through the general protein matrix at 1.0 A. For a unimolecular donor-acceptor pair with ket = koexp(-r/rho), ko approximately 10(9) sec-1.This publication has 30 references indexed in Scilit:
- TRYPTOPHAN PHOSPHORESCENCE AT ROOM TEMPERATURE AS A TOOL TO STUDY PROTEIN STRUCTURE AND DYNAMICSPhotochemistry and Photobiology, 1989
- Quenching of room temperature protein phosphorescence by added small moleculesBiochemistry, 1988
- Directional electron transfer in ruthenium-modified horse heart cytochrome cNature, 1986
- Refined structure of alkaline phosphatase from Escherichia coli at 2.8 Å resolutionJournal of Molecular Biology, 1985
- Penetration of small molecules into proteins studied by quenching of phosphorescence and fluorescenceBiochemistry, 1983
- A crystallographic model for azurin at 3 Å resolutionJournal of Molecular Biology, 1978
- The protein data bank: A computer-based archival file for macromolecular structuresJournal of Molecular Biology, 1977
- Three-dimensional structure of horse liver alcohol dehydrogenase at 2.4 Å resolutionJournal of Molecular Biology, 1976
- Tertiary structural differences between microbial serine proteases and pancreatic serine enzymesNature, 1975
- The structure of thermolysin: An electron density map at 2.3 Å resolutionJournal of Molecular Biology, 1972