Is it genomic imprinting or preferential expression?
- 17 September 2007
- Vol. 29 (10) , 1022-1028
- https://doi.org/10.1002/bies.20637
Abstract
Imprinted genes are monoallelically expressed in a parent-of-origin-specific manner, but for many genes reported to be imprinted, the occurrence of preferential expression—where both alleles are expressed but one is expressed more strongly than the other in a parent-of-origin-specific way—has been reported. This preferential expression found in genes described as imprinted has not been thoroughly addressed in genomic imprinting studies. To study this phenomenon, 50 genes, reported to be imprinted in the mouse, were chosen for investigation. Preferential expression was observed for 21 of 27 maternally expressed genes. However, only 5 of 23 paternally expressed genes showed preferential expression. Recently, it has been reported that a remarkable proportion of non-imprinted genes show differential allelic expression. If there is overlap between non-imprinted genes that are differentially expressed and imprinted genes that are preferentially expressed, we need to set new definitions of imprinted genes that, in turn, would probably lead to reassessments of the total number of imprinted genes in mammalian species. BioEssays 29:1022–1028, 2007.Keywords
This publication has 63 references indexed in Scilit:
- Bisulfite sequencing and dinucleotide content analysis of 15 imprinted mouse differentially methylated regions (DMRs): paternally methylated DMRs contain less CpGs than maternally methylated DMRsCytogenetic and Genome Research, 2006
- Analysis of allelic differential expression in human white blood cellsGenome Research, 2006
- Imprinting along the Kcnq1 domain on mouse chromosome 7 involves repressive histone methylation and recruitment of Polycomb group complexesNature Genetics, 2004
- A survey of genetic and epigenetic variation affecting human gene expressionPhysiological Genomics, 2004
- Calcr, a brain-specific imprinted mouse calcitonin receptor gene in the imprinted cluster of the proximal region of chromosome 6Journal of Human Genetics, 2003
- Predominant maternal expression of the mouse Atp10c in hippocampus and olfactory bulbJournal of Human Genetics, 2003
- Detection of regulatory variation in mouse genesNature Genetics, 2002
- Asb4, Ata3, and Dcn Are Novel Imprinted Genes Identified by High-Throughput Screening Using RIKEN cDNA MicroarrayBiochemical and Biophysical Research Communications, 2002
- Paternal Expression of a Novel Imprinted Gene, Peg12/Frat3, in the Mouse 7C Region Homologous to the Prader–Willi Syndrome RegionBiochemical and Biophysical Research Communications, 2002
- Mit1/Lb9andCopg2, new members of mouse imprinted genes closely linked toPeg1/MestFEBS Letters, 2000