The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data
Top Cited Papers
Open Access
- 7 November 2006
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 35 (Database) , D169-D172
- https://doi.org/10.1093/nar/gkl889
Abstract
Substantial new features have been implemented at the Ribosomal Database Project in response to the increased importance of high-throughput rRNA sequence analysis in microbial ecology and related disciplines. The most important changes include quality analysis, including chimera detection, for all available rRNA sequences and the introduction of myRDP Space, a new web component designed to help researchers place their own data in context with the RDP's data. In addition, new video tutorials describe how to use RDP features. Details about RDP data and analytical functions can be found at the RDP-II website ( ).Keywords
This publication has 16 references indexed in Scilit:
- At Least 1 in 20 16S rRNA Sequence Records Currently Held in Public Repositories Is Estimated To Contain Substantial AnomaliesApplied and Environmental Microbiology, 2005
- Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species RichnessApplied and Environmental Microbiology, 2005
- The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysisNucleic Acids Research, 2004
- BLAST: at the core of a powerful and diverse set of sequence analysis toolsNucleic Acids Research, 2004
- MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignmentBriefings in Bioinformatics, 2004
- Weighted Neighbor Joining: A Likelihood-Based Approach to Distance-Based Phylogeny ReconstructionMolecular Biology and Evolution, 2000
- Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy AssessmentGenome Research, 1998
- Base-Calling of Automated Sequencer Traces Using Phred. II. Error ProbabilitiesGenome Research, 1998
- fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihoodBioinformatics, 1994
- Evolutionary trees from DNA sequences: A maximum likelihood approachJournal of Molecular Evolution, 1981