An analysis of genetic variation across the MBL2 locus in Dutch Caucasians indicates that 3′ haplotypes could modify circulating levels of mannose-binding lectin
- 6 October 2005
- journal article
- Published by Springer Nature in Human Genetics
- Vol. 118 (3-4) , 404-415
- https://doi.org/10.1007/s00439-005-0053-5
Abstract
Mannose-binding protein (MBL) is a critical component of innate immunity and provides first-line protection against pathogens. Both circulating MBL serum levels and functional activity have been correlated with common genetic variants in the MBL2 gene. Associations between MBL deficiency and severe infections have been reported in immuno-incompetent patients and for autoimmune disorders; however, measured MBL serum levels do not fully correlate with the ‘secretor haplotypes’. Previously, the MBL2 locus was resequenced and determined that a recombination hotspot divides MBL2 into two haplotype blocks. It was sought to investigate whether additional variants, in either block structure could associate with MBL serum levels. Therefore, 31 common variants were analysed across the locus in 212 DNA samples of healthy Caucasian individuals with known MBL serum concentrations. The additional 5′ variants were in strong linkage to the elements of the ‘secretor haplotypes’; functional alleles B, C and D also lie on restricted haplotypes. Four variants in the 3′ block (Ex4-1483T>C, Ex4-1067G>A, Ex4-901G>A and Ex4-710G>A) are components of a distinct haplotype block. The results of this study suggest that additional 5′ variants as well as markers of distinct 3′ haplotype blocks in MBL2 may contribute to circulating protein levels, but further studies are required to confirm these observations. Last, there could be a selective advantage for diversification of the 3′ region of the gene.Keywords
This publication has 49 references indexed in Scilit:
- The role of haplotypes in candidate gene studiesGenetic Epidemiology, 2004
- Haploview: analysis and visualization of LD and haplotype mapsBioinformatics, 2004
- Evidence for substantial fine-scale variation in recombination rates across the human genomeNature Genetics, 2004
- A Comparison of Bayesian Methods for Haplotype Reconstruction from Population Genotype DataAmerican Journal of Human Genetics, 2003
- On the advantage of haplotype analysis in the presence of multiple disease susceptibility allelesGenetic Epidemiology, 2002
- Score Tests for Association between Traits and Haplotypes when Linkage Phase Is AmbiguousAmerican Journal of Human Genetics, 2002
- Nomenclature for the description of human sequence variationsHuman Genetics, 2001
- Metabolic Properties of Normal and Mutant Mannan-Binding Proteins in Mouse PlasmaBiochemical and Biophysical Research Communications, 1999
- Human Serum Mannose Binding Protein (MBP): Development of an Enzyme-Linked Immunosorbent Assay (ELISA) and Determination of Levels in Serum from 1085 Normal Japanese and in Some Body FluidsBiochemical Medicine and Metabolic Biology, 1993
- Sequential Monte Carlo p-valuesBiometrika, 1991