Haplotype Analysis in Population-based Association Studies
- 1 November 2001
- journal article
- research article
- Published by SAGE Publications in The Stata Journal: Promoting communications on statistics and Stata
- Vol. 1 (1) , 58-75
- https://doi.org/10.1177/1536867x0100100104
Abstract
This paper describes how to use the command hapipf and introduces the command profhap written for Stata that analyzes population-based genetic data. For these studies, association can be linkage disequilibrium within a set of loci or al-lelic/haplotype association with disease status. Confidence intervals for odds ratios are calculated with or without adjustment for possible factors that are confounding the relationship. Additionally, this command allows the specification of many models of association that are not widely implemented.Keywords
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