Inferential Structure Determination
Top Cited Papers
- 8 July 2005
- journal article
- other
- Published by American Association for the Advancement of Science (AAAS) in Science
- Vol. 309 (5732) , 303-306
- https://doi.org/10.1126/science.1110428
Abstract
Macromolecular structures calculated from nuclear magnetic resonance data are not fully determined by experimental data but depend on subjective choices in data treatment and parameter settings. This makes it difficult to objectively judge the precision of the structures. We used Bayesian inference to derive a probability distribution that represents the unknown structure and its precision. This probability distribution also determines additional unknowns, such as theory parameters, that previously had to be chosen empirically. We implemented this approach by using Markov chain Monte Carlo techniques. Our method provides an objective figure of merit and improves structural quality.Keywords
This publication has 20 references indexed in Scilit:
- Estimation of Dynamic Parameters from NMR Relaxation Data using the Lipari–Szabo Model-Free Approach and Bayesian Statistical MethodsJournal of Magnetic Resonance, 1999
- Ambiguous NOEs and automated NOE assignmentProgress in Nuclear Magnetic Resonance Spectroscopy, 1998
- Automated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from β-spectrin 1 1Edited by P. E. WrightJournal of Molecular Biology, 1997
- MOLMOL: A program for display and analysis of macromolecular structuresJournal of Molecular Graphics, 1996
- Assessing the Quality of Solution Nuclear Magnetic Resonance Structures by Complete Cross-ValidationScience, 1993
- Computational challenges for macromolecular structure determination by X-ray crystallography and solution NMRspectroscopyQuarterly Reviews of Biophysics, 1993
- Free R value: a novel statistical quantity for assessing the accuracy of crystal structuresNature, 1992
- Hybrid Monte CarloPhysics Letters B, 1987
- Replica Monte Carlo Simulation of Spin-GlassesPhysical Review Letters, 1986
- Vicinal Proton Coupling in Nuclear Magnetic ResonanceJournal of the American Chemical Society, 1963