High Performance Liquid Chromatography−Mass Spectrometry for Metabonomics: Potential Biomarkers for Acute Deterioration of Liver Function in Chronic Hepatitis B
- 10 February 2006
- journal article
- research article
- Published by American Chemical Society (ACS) in Journal of Proteome Research
- Vol. 5 (3) , 554-561
- https://doi.org/10.1021/pr050364w
Abstract
Metabonomics methods have been successfully applied to the drug discovery, toxicology, phytochemistry, and clinical fields. Here, we report a self-developed metabonomics platform which is based on high performance liquid chromatography−mass spectrometry (HPLC−MS) technique and applied to the investigation of acute deterioration of liver function in chronic hepatitis B to find the potential biomarkers. Sera from 50 healthy persons and 37 patients with acute deterioration of liver function in chronic hepatitis B were analyzed by HPLC−MS after removal of proteins. After de-noise, peak detection and peak alignment, the data of metabolites were fed to partial least squares discriminant analysis (PLS-DA) to find the potential biomarkers. According to the corresponding tandem mass results, several potential biomarkers were identified: Lysophosphatidyl Choline (LPC) C18:0, LPC C16:0, LPC C18:1, LPC C18:2, and glycochenodeoxycholic acid (GCDCA) (or its isomer glycodeoxycholic acid (GDCA)). On the basis of the relevant literature and pathway databases, the biological significance of the present study is discussed. Keywords: metabonomics • hepatitis • LC • MS • PLS-DA • serum • biomarkerKeywords
This publication has 24 references indexed in Scilit:
- High-Throughput Data Analysis for Detecting and Identifying Differences between Samples in GC/MS-Based Metabolomic AnalysesAnalytical Chemistry, 2005
- Extraction, interpretation and validation of information for comparing samples in metabolic LC/MS data setsThe Analyst, 2005
- Corrigendum to “Frontiers in nutrigenomics, proteomics, metabolomics and cancer prevention” [Mutat. Res. 551 (2004) 51–64]Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis, 2005
- HPLC-MS-based methods for the study of metabonomicsJournal of Chromatography B, 2004
- Decreased lysophosphatidylcholine/phosphatidylcholine ratio in cerebrospinal fluid in Alzheimer?s diseaseJournal Of Neural Transmission-Parkinsons Disease and Dementia Section, 2003
- NMR-based metabonomic toxicity classification: hierarchical cluster analysis and k-nearest-neighbour approachesAnalytica Chimica Acta, 2003
- Metabonomics: a platform for studying drug toxicity and gene functionNature Reviews Drug Discovery, 2002
- The Push-Me Pull-You of T Cell ActivationScience, 2001
- An NMR‐based metabonomic approach to the investigation of coelomic fluid biochemistry in earthworms under toxic stressFEBS Letters, 2001
- 'Metabonomics': understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic dataXenobiotica, 1999