Extensions of net reclassification improvement calculations to measure usefulness of new biomarkers
Top Cited Papers
- 5 November 2010
- journal article
- research article
- Published by Wiley in Statistics in Medicine
- Vol. 30 (1) , 11-21
- https://doi.org/10.1002/sim.4085
Abstract
Appropriate quantification of added usefulness offered by new markers included in risk prediction algorithms is a problem of active research and debate. Standard methods, including statistical significance and c statistic are useful but not sufficient. Net reclassification improvement (NRI) offers a simple intuitive way of quantifying improvement offered by new markers and has been gaining popularity among researchers. However, several aspects of the NRI have not been studied in sufficient detail.In this paper we propose a prospective formulation for the NRI which offers immediate application to survival and competing risk data as well as allows for easy weighting with observed or perceived costs. We address the issue of the number and choice of categories and their impact on NRI. We contrast category‐based NRI with one which is category‐free and conclude that NRIs cannot be compared across studies unless they are defined in the same manner. We discuss the impact of differing event rates when models are applied to different samples or definitions of events and durations of follow‐up vary between studies. We also show how NRI can be applied to case–control data. The concepts presented in the paper are illustrated in a Framingham Heart Study example.In conclusion, NRI can be readily calculated for survival, competing risk, and case–control data, is more objective and comparable across studies using the category‐free version, and can include relative costs for classifications. We recommend that researchers clearly define and justify the choices they make when choosing NRI for their application. Copyright © 2010 John Wiley & Sons, Ltd.Keywords
This publication has 29 references indexed in Scilit:
- Development of a risk score for atrial fibrillation (Framingham Heart Study): a community-based cohort studyThe Lancet, 2009
- Genotype Score in Addition to Common Risk Factors for Prediction of Type 2 DiabetesNew England Journal of Medicine, 2008
- General Cardiovascular Risk Profile for Use in Primary CareCirculation, 2008
- A Risk Score for Predicting Near-Term Incidence of Hypertension: The Framingham Heart StudyAnnals of Internal Medicine, 2008
- Comments on ‘Evaluating the added predictive ability of a new marker: From area under the ROC curve to reclassification and beyond’ by M. J. Pencina et al., Statistics in Medicine (DOI: 10.1002/sim.2929)Statistics in Medicine, 2007
- Evaluating the added predictive ability of a new marker: From area under the ROC curve to reclassification and beyondStatistics in Medicine, 2007
- Use and Misuse of the Receiver Operating Characteristic Curve in Risk PredictionCirculation, 2007
- Prediction of Coronary Heart Disease Using Risk Factor CategoriesCirculation, 1998
- Stroke risk profile: adjustment for antihypertensive medication. The Framingham Study.Stroke, 1994
- Projecting Individualized Probabilities of Developing Breast Cancer for White Females Who Are Being Examined AnnuallyJNCI Journal of the National Cancer Institute, 1989