Computation of the Electronic and Spectroscopic Properties of Carbohydrates Using Novel Density Functional and Vibrational Self-Consistent Field Methods
- 1 January 1999
- journal article
- research article
- Published by Taylor & Francis in Journal of Carbohydrate Chemistry
- Vol. 18 (8) , 867-890
- https://doi.org/10.1080/07328309908544041
Abstract
A novel density functional method is presented for the calculation of electronic and thermodynamical properties of oligosaccharides. This method, termed K2-BVWN, offers two advantages; it scales as N 3, where N is the number of basis functions, and there are only two adjustable parameters. The current density functional method is tested in terms of reproducing high level gas phase ab initio calculations in eleven low energy conformers of D-glucopyranose including exo-anomeric and different hydroxymethyl orientations (G −, G +, and T). The K2-BVWN method is also tested in terms of reproducing the spectroscopic features of D-glucopyranose and D-mannopyranose (α/β) as compared with both a vibrational self-consistent field calculation (VSCF) as well as experimental infrared spectroscopy. The VSCF calculations offer the advantage that it is possible to include higher order mode coupling and anharmonic effects directly into the calculation of the vibrational frequencies. In general, the K2-BVWN method reproduces the ab initio energetic trends of the different conformers of D-glucose. While the absolute energies are not the same between the ab initio and the K2-BVWN method, both methods do predict a preference for the α-anomer in the gas phase (0.4 kcal/mol ab initio, 0.0 – 0.5 kcal/mol K2-BVWN). The K2-BVWN method was able to reproduce the experimental and VSCF calculated spectrum of both D-glucopyranose and D-mannopyranose in the frequency range between 1500 – 800 cm−1. Because the current density functional method is both relatively quick and accurate, it represents a significant advancement in the development of oligosaccharide force fields.Keywords
This publication has 44 references indexed in Scilit:
- Anharmonic Vibrational Self-Consistent Field Calculations as an Approach to Improving Force Fields for MonosaccharidesThe Journal of Physical Chemistry B, 1999
- Novel Density Functional Methodology for the Computation of Accurate Electronic and Thermodynamic Properties of Molecular Systems and Improved Long-Range BehaviorThe Journal of Physical Chemistry A, 1998
- Use of Locally Enhanced Sampling in Free Energy Calculations: Testing and Application to the α → β Anomerization of GlucoseJournal of the American Chemical Society, 1998
- A Simple Coupling Scheme between Hartree−Fock and Local Spin-Density Functional TheoriesThe Journal of Physical Chemistry A, 1998
- A Quantum Mechanically Derived All-Atom Force Field for Pyranose Oligosaccharides. AMBER* Parameters and Free Energy SimulationsThe Journal of Organic Chemistry, 1997
- Assessment of Gaussian-2 and density functional theories for the computation of enthalpies of formationThe Journal of Chemical Physics, 1997
- Ab Initio and Experimental Studies on the Protonation of Glucose in the Gas PhaseJournal of the American Chemical Society, 1996
- MOIL: A program for simulations of macromoleculesComputer Physics Communications, 1995
- Vibrational molecular force field of model compounds with biologic interest. II. Harmonic dynamics of both anomers of glucose in the crystalline stateJournal of Computational Chemistry, 1993
- 10. The structure and conformation of some monosaccharides in solutionJournal of the Chemical Society, 1965