Overview of Commonly Used Bioinformatics Methods and Their Applications
- 1 May 2004
- journal article
- review article
- Published by Wiley in Annals of the New York Academy of Sciences
- Vol. 1020 (1) , 10-21
- https://doi.org/10.1196/annals.1310.003
Abstract
Abstract:Bioinformatics, in its broad sense, involves application of computer processes to solve biological problems. A wide range of computational tools are needed to effectively and efficiently process large amounts of data being generated as a result of recent technological innovations in biology and medicine. A number of computational tools have been developed or adapted to deal with the experimental riches of complex and multivariate data and transition from data collection to information or knowledge. These include a wide variety of clustering and classification algorithms, includingself‐organized maps(SOM),artificial neural networks(ANN),support vector machines(SVM),fuzzy logic, and even hyphenated techniques asneuro‐fuzzy networks. These bioinformatics tools are being evaluated and applied in various medical areas including early detection, risk assessment, classification, and prognosis of cancer. The goal of these efforts is to develop and identify bioinformatics methods with optimal sensitivity, specificity, and predictive capabilities.Keywords
This publication has 40 references indexed in Scilit:
- Use Of Artificial Neural Networks In Prostate CancerMolecular Urology, 2001
- Neural networks and genetic algorithms in drug designDrug Discovery Today, 2001
- Survey of utilisation of fuzzy technology in Medicine and HealthcareFuzzy Sets and Systems, 2001
- Computational analysis of microarray dataNature Reviews Genetics, 2001
- Significance analysis of microarrays applied to the ionizing radiation responseProceedings of the National Academy of Sciences, 2001
- Pharmacogenomics: Unlocking the Human Genome for Better Drug TherapyAnnual Review of Pharmacology and Toxicology, 2001
- Chemical ligands, genomics and drug discoveryDrug Discovery Today, 2000
- Additive logistic regression: a statistical view of boosting (With discussion and a rejoinder by the authors)The Annals of Statistics, 2000
- Distinct types of diffuse large B-cell lymphoma identified by gene expression profilingNature, 2000
- Fuzzy diagnosisArtificial Intelligence in Medicine, 1999