X‐ray structure of potato epoxide hydrolase sheds light on substrate specificity in plant enzymes
- 1 July 2006
- journal article
- Published by Wiley in Protein Science
- Vol. 15 (7) , 1628-1637
- https://doi.org/10.1110/ps.051792106
Abstract
Epoxide hydrolases catalyze the conversion of epoxides to diols. The known functions of such enzymes include detoxification of xenobiotics, drug metabolism, synthesis of signaling compounds, and intermediary metabolism. In plants, epoxide hydrolases are thought to participate in general defense systems. In the present study, we report the first structure of a plant epoxide hydrolase, one of the four homologous enzymes found in potato. The structure was solved by molecular replacement and refined to a resolution of 1.95 A. Analysis of the structure allows a better understanding of the observed substrate specificities and activity. Further, comparisons with mammalian and fungal epoxide hydrolase structures reported earlier show the basis of differing substrate specificities in the various epoxide hydrolase subfamilies. Most plant enzymes, like the potato epoxide hydrolase, are expected to be monomers with a preference for substrates with long lipid-like substituents of the epoxide ring. The significance of these results in the context of biological roles and industrial applications is discussed.Keywords
This publication has 37 references indexed in Scilit:
- Solvent content of protein crystalsPublished by Elsevier ,2006
- Implications for an Ionized Alkyl-Enzyme Intermediate during StEH1-Catalyzed trans-Stilbene Oxide HydrolysisBiochemistry, 2005
- EPOXIDE HYDROLASES: Mechanisms, Inhibitor Designs, and Biological RolesAnnual Review of Pharmacology and Toxicology, 2005
- Sequence and structure of epoxide hydrolases: A systematic analysisProteins-Structure Function and Bioinformatics, 2004
- The Protein Data BankNucleic Acids Research, 2000
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programsNucleic Acids Research, 1997
- Refinement of Macromolecular Structures by the Maximum-Likelihood MethodActa Crystallographica Section D-Biological Crystallography, 1997
- The CCP4 suite: programs for protein crystallographyActa Crystallographica Section D-Biological Crystallography, 1994
- Cloning and expression of soluble epoxide hydrolase from potatoThe Plant Journal, 1994
- Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical featuresBiopolymers, 1983