Optimizing data intensive GPGPU computations for DNA sequence alignment
- 1 August 2009
- journal article
- Published by Elsevier in Parallel Computing
- Vol. 35 (8-9) , 429-440
- https://doi.org/10.1016/j.parco.2009.05.002
Abstract
No abstract availableKeywords
This publication has 13 references indexed in Scilit:
- The year of sequencingNature Methods, 2008
- High-throughput sequence alignment using Graphics Processing UnitsBMC Bioinformatics, 2007
- Accelerating molecular modeling applications with graphics processorsJournal of Computational Chemistry, 2007
- Stackless KD‐Tree Traversal for High Performance GPU Ray TracingComputer Graphics Forum, 2007
- Next-generation sequencing outpaces expectationsNature Biotechnology, 2007
- Fast algorithms for large-scale genome alignment and comparisonNucleic Acids Research, 2002
- A Whole-Genome Assembly of DrosophilaScience, 2000
- Alignment of whole genomesNucleic Acids Research, 1999
- On-line construction of suffix treesAlgorithmica, 1995
- Basic local alignment search toolJournal of Molecular Biology, 1990