From knotted to nested RNA structures: A variety of computational methods for pseudoknot removal
- 29 January 2008
- journal article
- Published by Cold Spring Harbor Laboratory in RNA
- Vol. 14 (3) , 410-416
- https://doi.org/10.1261/rna.881308
Abstract
A monthly journal publishing high-quality, peer-reviewed research on all topics related to RNA and its metabolism in all organismsKeywords
This publication has 38 references indexed in Scilit:
- PyCogent: a toolkit for making sense from sequenceGenome Biology, 2007
- Predicting helical coaxial stacking in RNA multibranch loopsRNA, 2007
- Parsing Nucleic Acid Pseudoknotted Secondary Structure: Algorithm and ApplicationsJournal of Computational Biology, 2007
- High sensitivity RNA pseudoknot predictionNucleic Acids Research, 2006
- RNAMST: efficient and flexible approach for identifying RNA structural homologsNucleic Acids Research, 2006
- Pseudoknots: RNA Structures with Diverse FunctionsPLoS Biology, 2005
- Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structureBioinformatics, 2005
- The Protein Data BankNucleic Acids Research, 2000
- Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structureJournal of Molecular Biology, 1999
- A dynamic programming algorithm for RNA structure prediction including pseudoknots 1 1Edited by I. TinocoJournal of Molecular Biology, 1999