A united-residue force field for off-lattice protein-structure simulations. II. Parameterization of short-range interactions and determination of weights of energy terms by Z-score optimization
- 1 May 1997
- journal article
- research article
- Published by Wiley in Journal of Computational Chemistry
- Vol. 18 (7) , 874-887
- https://doi.org/10.1002/(sici)1096-987x(199705)18:7<874::aid-jcc2>3.0.co;2-o
Abstract
No abstract availableKeywords
This publication has 19 references indexed in Scilit:
- Optimizing Potential Functions for Protein FoldingThe Journal of Physical Chemistry, 1996
- Statistical thermodynamics of protein folding: sequence dependenceThe Journal of Physical Chemistry, 1994
- How does a protein fold?Nature, 1994
- Calculation of protein backbone geometry from α‐carbon coordinates based on peptide‐group dipole alignmentProtein Science, 1993
- Prediction of protein conformation on the basis of a search for compact structures: Test on avian pancreatic polypeptideProtein Science, 1993
- Topology fingerprint approach to the inverse protein folding problemJournal of Molecular Biology, 1992
- Energy parameters in polypeptides. 9. Updating of geometrical parameters, nonbonded interactions, and hydrogen bond interactions for the naturally occurring amino acidsThe Journal of Physical Chemistry, 1983
- A simplified representation of protein conformations for rapid simulation of protein foldingJournal of Molecular Biology, 1976
- Energy parameters in polypeptides. VII. Geometric parameters, partial atomic charges, nonbonded interactions, hydrogen bond interactions, and intrinsic torsional potentials for the naturally occurring amino acidsThe Journal of Physical Chemistry, 1975
- Low-Energy Structures of Two Dipeptides and Their Relationship to Bend ConformationsMacromolecules, 1974