GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways
Open Access
- 29 May 2008
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 36 (suppl_2) , W176-W180
- https://doi.org/10.1093/nar/gkn330
Abstract
The Gene Context Tool (GeConT) allows users to visualize the genomic context of a gene or a group of genes and their orthologous relationships within fully sequenced bacterial genomes. The new version of the server incorporates information from the COG, Pfam and KEGG databases, allowing users to have an integrated graphical representation of the function of genes at multiple levels, their phylogenetic distribution and their genomic context. The sequence of any of the genes can be easily retrieved, as well as the 5′ or 3′ regulatory regions, greatly facilitating further types of analysis. GeConT 2 is available at: http://bioinfo.ibt.unam.mx/gecont .Keywords
This publication has 39 references indexed in Scilit:
- GenBankNucleic Acids Research, 2007
- KEGG for linking genomes to life and the environmentNucleic Acids Research, 2007
- The Universal Protein Resource (UniProt)Nucleic Acids Research, 2007
- NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteinsNucleic Acids Research, 2007
- The Universal Protein Resource (UniProt)Nucleic Acids Research, 2006
- STRING 7--recent developments in the integration and prediction of protein interactionsNucleic Acids Research, 2006
- MEME: discovering and analyzing DNA and protein sequence motifsNucleic Acids Research, 2006
- MUSCLE: multiple sequence alignment with high accuracy and high throughputNucleic Acids Research, 2004
- Who's your neighbor? New computational approaches for functional genomicsNature Biotechnology, 2000