Microgenomics: Identification of new expression profiles via small and single‐cell sample analyses
- 17 May 2004
- journal article
- review article
- Published by Wiley in Cytometry Part A
- Vol. 59A (2) , 254-261
- https://doi.org/10.1002/cyto.a.20051
Abstract
Background Since the sequencing of the human genome has been finished, microgenomics has been booming, employing highly sophisticated, high‐throughput platforms. But these mainly chip‐based methods can only generate biologically relevant data if the samples investigated consist of homogenous cell populations, in which no unwanted cells of different specificity and/or developmental stage obscure the results. Methods Different sampling methods have been routinely applied to overcome the problem presented by heterogeneous samples, e.g., global surveys, cell cultures, and microdissection. Various methods of laser‐assisted microdissection, employing either positive or negative selection of tissue areas or even single cells, are available. Results These laser‐assisted microdissection methods allow for fast and precise procurement of extremely small samples. Through subsequent application of recently developed methods of linear mRNA amplification in a pool of isolated total RNA, it has now become possible to perform complex high‐throughput RNA expression profiling by microdissecting and processing even single‐cell samples. Conclusions Studies using the tools and methods of microgenomics have shed light on how those new approaches will eventually aid in the development of a new generation of diagnostics, e.g., leading to new patient‐specific drugs tailored to the requirements assessed by assaying only a few biopsy cells.Keywords
This publication has 46 references indexed in Scilit:
- Cytomics—New technologies: Towards a human cytome projectCytometry Part A, 2004
- Microarray Analysis Using Amplified mRNA from Laser Capture Microdissection of Microscopic Hepatocellular Precancerous Lesions and Frozen Hepatocellular Carcinomas Reveals Unique and Consistent Gene Expression ProfilesToxicologic Pathology, 2003
- A Gene-Expression Signature as a Predictor of Survival in Breast CancerNew England Journal of Medicine, 2002
- The DNA sequence and comparative analysis of human chromosome 20Nature, 2001
- Tissue microarrays (TMAs) for high-throughput molecular pathology researchInternational Journal of Cancer, 2001
- A physical map of the human genomeNature, 2001
- Initial sequencing and analysis of the human genomeNature, 2001
- Distinct pattern of expression of differentiation and growth-related genes in squamous cell carcinomas of the head and neck revealed by the use of laser capture microdissection and cDNA arraysOncogene, 2000
- Distinct types of diffuse large B-cell lymphoma identified by gene expression profilingNature, 2000
- Tissue microarrays for high-throughput molecular profiling of tumor specimensNature Medicine, 1998