DIYA: a bacterial annotation pipeline for any genomics lab
Open Access
- 2 March 2009
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 25 (7) , 962-963
- https://doi.org/10.1093/bioinformatics/btp097
Abstract
Summary:DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences. The software is currently used to take DNA contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence in Genbank file format as output. Availability: Distribution and source code are available at (https://sourceforge.net/projects/diyg/). Contact:tread@emory.edu Supplementary information: Supplementary data are available at Bioinformatics online.Keywords
This publication has 15 references indexed in Scilit:
- CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaeaNature Reviews Microbiology, 2008
- The RAST Server: Rapid Annotations using Subsystems TechnologyBMC Genomics, 2008
- The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotationBMC Bioinformatics, 2008
- Technology: A genome sequencing center in every labEuropean Journal of Human Genetics, 2005
- GARSA: genomic analysis resources for sequence annotationBioinformatics, 2005
- A System for Automated Bacterial (genome) Integrated Annotation—SABIABioinformatics, 2004
- The Generic Genome Browser: A Building Block for a Model Organism System DatabaseGenome Research, 2002
- The Bioperl Toolkit: Perl Modules for the Life SciencesGenome Research, 2002
- tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic SequenceNucleic Acids Research, 1997
- Basic local alignment search toolJournal of Molecular Biology, 1990