The JigCell Model Builder and Run Manager

Open Access

23 July 2004

journal article
research article
Published by Oxford University Press (OUP) in Bioinformatics

Vol. 20 (18) , 3680-3681
https://doi.org/10.1093/bioinformatics/bth422

Abstract

Summary: We describe the JigCell Model Builder (JCMB), a tool for creating biochemical reaction network models. JCMB is designed for ease of use and its interface uses the standard spreadsheet metaphor. The JigCell Run Manager (JCRM) is a tool for organizing the large collections of simulation runs typically required by reaction network modeling activities. Availability: JCMB and JCRM are part of the JigCell suite available at http://jigcell.biol.vt.edu

Keywords

JIGCELL SUITE
JIGCELL MODEL BUILDER
JIGCELL RUN MANAGER
REACTION NETWORK MODELING ACTIVITY
BIOCHEMICAL REACTION NETWORK MODEL
LARGE COLLECTION
STANDARD SPREADSHEET METAPHOR
THYMIDYLATE SYNTHASE
COLORECTAL CANCER
NETWORK MODEL
EASE OF USE

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