The ProDom database of protein domain families: more emphasis on 3D
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Open Access
- 17 December 2004
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 33 (Database ) , D212-D215
- https://doi.org/10.1093/nar/gki034
Abstract
ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. Recent improvements include the use of three-dimensional (313) information from the SCOP database; a completely redesigned web interface (http://www. toulouse.inra.fr/prodom.htmi); visualization of ProDom domains on 3D structures; coupling of ProDom analysis with the Geno3D homology modelling server; Bayesian inference of evolutionary scenarios for ProDom families. In addition, we have developed ProDom-SG, a ProDom-based server dedicated to the selection of candidate proteins for structural genomics.Keywords
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