SZGR: a comprehensive schizophrenia gene resource
Open Access
- 28 April 2010
- journal article
- research article
- Published by Springer Nature in Molecular Psychiatry
- Vol. 15 (5) , 453-462
- https://doi.org/10.1038/mp.2009.93
Abstract
Schizophrenia is a major debilitating psychiatric disorder affecting ∼1% of the population worldwide. A tremendous amount of effort has been expended in the last two decades to identify genes influencing susceptibility to this disorder. Although there is a strong trend toward integrating data obtained from various genetic studies and their related biological information into a comprehensive resource for many complex diseases, we were unable to find such an effort for schizophrenia or for any other psychiatric disorder yet. In this study, we present Schizophrenia gene resource (SZGR), a comprehensive database with user-friendly web interface. SZGR deposits genetic data from all available sources, including those from association studies, linkage scans, gene expression, literature, gene ontology (GO) annotations, gene networks, cellular and regulatory pathways, as well as microRNAs and their target sites. Moreover, SZGR provides online tools for data browse and search, data integration, custom gene ranking and graphical presentation. This system can be easily applied to other complex diseases, especially to other psychiatric disorders. The SZGR database is available at http://bioinfo.mc.vanderbilt.edu/SZGR/.Keywords
This publication has 36 references indexed in Scilit:
- A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases–schizophrenia as a caseBioinformatics, 2009
- Meta-analysis of 32 genome-wide linkage studies of schizophreniaMolecular Psychiatry, 2008
- A searchable database of genetic evidence for psychiatric disordersAmerican Journal Of Medical Genetics Part B-Neuropsychiatric Genetics, 2008
- Network‐based global inference of human disease genesMolecular Systems Biology, 2008
- KEGG for linking genomes to life and the environmentNucleic Acids Research, 2007
- A Mammalian microRNA Expression Atlas Based on Small RNA Library SequencingCell, 2007
- A gene atlas of the mouse and human protein-encoding transcriptomesProceedings of the National Academy of Sciences, 2004
- IntAct: an open source molecular interaction databaseNucleic Acids Research, 2004
- The Database of Interacting Proteins: 2004 updateNucleic Acids Research, 2004
- Development of Human Protein Reference Database as an Initial Platform for Approaching Systems Biology in HumansGenome Research, 2003