A quantum-dynamics study of the prototropic tautomerism of guanine and its contribution to spontaneous point mutations inEscherichia coli
- 1 January 2001
- journal article
- research article
- Published by Wiley in Biopolymers
- Vol. 61 (1) , 77-83
- https://doi.org/10.1002/1097-0282(2001)61:1<77::aid-bip10062>3.0.co;2-w
Abstract
High‐level quantum‐chemical and quantum‐dynamics calculations are reported on the tautomerization equilibrium and rate constants of guanine and its complexes with one and two water molecules. The results are used to estimate the fraction of guanine present in the cell during DNA synthesis as the unwanted tautomer that forms an irregular base pair with thymine, thus giving rise to a spontaneous GC → AT point mutation. A comparison of the estimated mutation frequency with the observed frequency in Escherichia coli is used to analyze two proposed mechanisms, differing in the extent of equilibration reached in the tautomerization reaction. In the absence of water, the equilibrium concentration of tautomeric forms is relatively large, but the barrier to their formation is high. If water is present, tautomeric forms are less favored, but water molecules may serve as efficient proton conduits causing rapid tautomerization. It is tentatively concluded that the mechanism in which a high tautomerization barrier keeps the tautomeric transformation far from a state of equilibrium is more likely than a mechanism in which water and/or polymerases produce a low equilibrium concentration of the tautomeric forms. © 2002 Wiley Periodicals, Inc. Biopoly (Nucleic Acid Sci) 61: 77–83, 2002; DOI 10.1002/bip.10062Keywords
This publication has 27 references indexed in Scilit:
- Guanine tautomerism revealed by UV–UV and IR–UV hole burning spectroscopyThe Journal of Chemical Physics, 2001
- The Potential Energy Surface of Guanine Is Not Flat: An ab Initio Study with Large Basis Sets and Higher Order Electron Correlation ContributionsThe Journal of Physical Chemistry A, 1998
- An ab initio quantum-mechanical study of tautomerism of purine, adenine and guanineJournal of Molecular Structure: THEOCHEM, 1990
- Matrix isolation infrared studies of nucleic acid constituentsJournal of Molecular Structure, 1987
- Comparison of nucleotide interactions in water, proteins, and vacuum: model for DNA polymerase fidelity.Proceedings of the National Academy of Sciences, 1986
- Alternative view of enzyme reactions.Proceedings of the National Academy of Sciences, 1985
- Complementary base pairing and the origin of substitution mutationsNature, 1976
- Mutational specificity of a conditional Escherichia coli mutator, mutD5Molecular Genetics and Genomics, 1974
- Quantum Genetics and the Aperiodic SolidPublished by Elsevier ,1966
- Genetical Implications of the Structure of Deoxyribonucleic AcidNature, 1953