MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data

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Open Access

10 January 2006

journal article
research article
Published by Oxford University Press (OUP) in Bioinformatics

Vol. 22 (5) , 634-636
https://doi.org/10.1093/bioinformatics/btk039

Abstract

Summary: New additional methods are presented for processing and visualizing mass spectrometry based molecular profile data, implemented as part of the recently introduced MZmine software. They include new features and extensions such as support for mzXML data format, capability to perform batch processing for large number of files, support for parallel processing, new methods for calculating peak areas using post-alignment peak picking algorithm and implementation of Sammon's mapping and curvilinear distance analysis for data visualization and exploratory analysis. Availability: MZmine is available under GNU Public license from Contact:matej.oresic@vtt.fi

Keywords

This publication has 3 references indexed in Scilit:

Processing methods for differential analysis of LC/MS profile data
BMC Bioinformatics, 2005
A common open representation of mass spectrometry data and its application to proteomics research
Nature Biotechnology, 2004
A Nonlinear Mapping for Data Structure Analysis
IEEE Transactions on Computers, 1969