The aromatic 1H‐NMR spectrum of plasminogen kringle 4
Open Access
- 1 September 1986
- journal article
- research article
- Published by Wiley in European Journal of Biochemistry
- Vol. 159 (3) , 581-595
- https://doi.org/10.1111/j.1432-1033.1986.tb09925.x
Abstract
The isolated kringle 4 domain of human plasminogen has been compared with homologous structures from bovine and porcine sources, both free and in the presence of the ligand 6-aminohexanoic acid, by two-dimensional 1H-NMR spectroscopies at 300 MHz and 600 MHz. The chemical-shift-correlated, spin-echo-correlated, and double-quantum-correlated aromatic spectra of three proteins reveal that the globular conformation of the fourth kringle is closely maintained throughout the set of homologs. Direct comparison shows that the three conserved Trp residues (at sites 25, 62 and 72) which exhibit highly non-degenerate subspectra, find themselves in similar intramolecular environments. In particular, proton Overhauser experiments reveal that the close steric interaction between the Trp-II (Trp62 or Trp25) indole group and the aromatic ring at site 74 (Tyr74 or Phe74) is strictly preserved. This feature forces the kringle inner loop, closed by the Cys51-Cys75 link, to fold back onto itself so as the place the site 74 residue proximal to the Cys22-Cys63 bridge. Single-residue substitutions enable unambiguous assignments of His-I to His3, Tyr-III to Tyr41 and Tyr-IV to Tyr74. From this direct evidence, comparison with the kringle 1 spectrum, and the previously reported chemical modication of Tyr-II (Tyr50) [Trexler, M., Banyai L., Patthy L., Pluck N. D. and Williams R.J.P. (1985) Eur. J. Biochem. 152, 439-446], Tyr-I and Tyr-V (the latter, an immobile ring on the 600-MHz time scale) could be assigned to Tyr2 and Tyr9, respectively. Since Trp-III has previously been assigned to Trp72 at the lysine-binding site, the present study completes the assignment of 10 out of 12 aromatic spin systems in the kringle 4 1H-NMR spectrum; the only ambiguity which remains concerns the Trp-I and Trp-II indole spin systems, which are totally identified but as yet only tentatively assigned to Trp25 and Trp62, respectively.This publication has 36 references indexed in Scilit:
- Proton Overhauser experiments on kringle 4 from human plasminogen. Implications for the structure of the kringles' hydrophobic coreBiochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology, 1985
- Correlation of proton chemical shifts in proteins using two-dimensional double-quantum spectroscopyJournal of Magnetic Resonance (1969), 1983
- Two-dimensional double quantum 1H NMR spectroscopy of proteinsBiochemical and Biophysical Research Communications, 1983
- A two-dimensional NMR method for assignment of imidazole ring proton resonances of histidine residues in proteinsBiochemical and Biophysical Research Communications, 1982
- Assignment of carbon-13 NMR spectra via double-quantum coherenceJournal of Magnetic Resonance (1969), 1981
- Experimental techniques of two-dimensional correlated spectroscopyJournal of Magnetic Resonance (1969), 1980
- Studies on the Lysine-Binding Sites of Human Plasminogen. The Effect of Ligand Structure on the Binding of Lysine Analogs to PlasminogenEuropean Journal of Biochemistry, 1980
- Two-dimensional spin echo correlated spectroscopy (SECSY) for 1H NMR studies of biological macromoleculesBiochemical and Biophysical Research Communications, 1979
- Resolution enhancement in FT NMR through the use of a double exponential functionJournal of Magnetic Resonance (1969), 1978
- pH dependence of internal referencesJournal of Magnetic Resonance (1969), 1977