ISOMER COMPOSITION and SPECTRA OF THE DARK and LIGHT ADAPTED FORMS OF ARTIFICIAL BACTERIORHODOPSINS*

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Abstract
Abstract– The isomer composition and spectral properties of 15 artificial bacteriorhodopsin (bR) pigments, based on a series of retinal analogs with polyene residue modified below C9 are determined for both dark‐adapted (DA) and light‐adapted (LA) forms. Similarly to native bR, in all cases only two isomers, C13=C14cis (13‐cis) and M‐trans, are observed. However, the artificial DA pigments have a lower 13‐d.s content than native DA bR (˜ 66%) while the corresponding LA pigments have a much higher 13‐cis content (11‐69%) than native LA bR (‐trans13‐cis process. The data are accounted for in terms of specific steric interactions between the polyene and the protein binding site which allow a (C15‐anti)(Cls‐syn) isomerization during the photocycle of the artificial pigments, but not in the case of native bR. This accounts for the high proton pumping efficiency of the natural pigment.The nature of a highly red shifted light‐adapted form of two of the artificial pigments is investigated and discussed. It is also shown that, in variance with native bR, several artificial pigments exhibit identical absorption spectra for their 13‐cis and all‐trans isomers. It is concluded that the spectral data for the above species of artificial pigments do not lead to a clear molecular model for the origin of the spectral shift between 13‐cis and all‐trans bR.