De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy
- 29 July 2002
- journal article
- Published by Proceedings of the National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 99 (16) , 10260-10265
- https://doi.org/10.1073/pnas.152346599
Abstract
The three-dimensional structure of the chemotactic peptide N-formyl-l-Met-l-Leu-l-Phe-OH was determined by using solid-state NMR (SSNMR). The set of SSNMR data consisted of 16 (13)C-(15)N distances and 18 torsion angle constraints (on 10 angles), recorded from uniformly (13)C,(15)N- and (15)N-labeled samples. The peptide's structure was calculated by means of simulated annealing and a newly developed protocol that ensures that all of conformational space, consistent with the structural constraints, is searched completely. The result is a high-quality structure of a molecule that has thus far not been amenable to single-crystal diffraction studies. The extensions of the SSNMR techniques and computational methods to larger systems appear promising.Keywords
This publication has 46 references indexed in Scilit:
- Rotational-echo double-resonance NMRPublished by Elsevier ,2004
- 2D and 3D15N−13C−13C NMR Chemical Shift Correlation Spectroscopy of Solids: Assignment of MAS Spectra of PeptidesJournal of the American Chemical Society, 2000
- Cross polarization in the tilted frame: assignment and spectral simplification in heteronuclear spin systemsMolecular Physics, 1998
- Intersubunit Communication in Tryptophan Synthase by Carbon-13 and Fluorine-19 REDOR NMRBiochemistry, 1996
- Ligand Geometry of the Ternary Complex of 5-Enolpyruvylshikimate-3-phosphate Synthase from Rotational-Echo Double-Resonance NMRBiochemistry, 1996
- Rotational resonance NMR study of the active site structure in bacteriorhodopsin: conformation of the Schiff base linkageBiochemistry, 1992
- Chemical shift correlation spectroscopy in rotating solids: Radio frequency-driven dipolar recoupling and longitudinal exchangeThe Journal of Chemical Physics, 1992
- Determination of three‐dimensional structures of proteins from interproton distance data by hybrid distance geometry‐dynamical simulated annealing calculationsFEBS Letters, 1988
- Tyrosyl motion in peptides. Deuterium NMR line shapes and spin-lattice relaxationJournal of the American Chemical Society, 1987
- Rotational jumps of the tyrosine side chain in crystalline enkephalin. Hydrogen-2 NMR line shapes for aromatic ring motions in solidsJournal of the American Chemical Society, 1981