GENOTRACE: cDNA-based local GENOme assembly from TRACE archives
Open Access
- 1 October 2002
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 18 (10) , 1396-1397
- https://doi.org/10.1093/bioinformatics/18.10.1396
Abstract
Summary: GENOTRACE identifies the genomic organization for a cDNA using raw data from genome sequencing projects in progress (trace archives). Local genomic contigs are generated, allowing for example the design of PCR primers in intronic sequences to amplify coding regions of a gene, needed for example for mutation or SNP detection. Availability: The package and examples of output files can be downloaded from http://rat.niob.knaw.nl/GENOTRACE Contact: ecuppen@niob.knaw.nlKeywords
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