The PredictProtein server
Open Access
- 1 July 2003
- journal article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 31 (13) , 3300-3304
- https://doi.org/10.1093/nar/gkg508
Abstract
PredictProtein (PP, http://cubic.bioc.columbia.edu/pp/) is an internet service for sequence analysis and the prediction of aspects of protein structure and function. Users submit protein sequence or alignments; the server returns a multiple sequence alignment, PROSITE sequence motifs, low-complexity regions (SEG), ProDom domain assignments, nuclear localisation signals, regions lacking regular structure and predictions of secondary structure, solvent accessibility, globular regions, transmembrane helices, coiled-coil regions, structural switch regions and disulfide-bonds. Upon request, fold recognition by prediction-based threading is available. For all services, users can submit their query either by electronic mail or interactively from World Wide Web.Keywords
This publication has 41 references indexed in Scilit:
- Loopy Proteins Appear Conserved in EvolutionJournal of Molecular Biology, 2002
- Enzyme Function Less Conserved than AnticipatedJournal of Molecular Biology, 2002
- The Protein Data BankNucleic Acids Research, 2000
- Protein secondary structure prediction based on position-specific scoring matrices 1 1Edited by G. Von HeijneJournal of Molecular Biology, 1999
- ESPript: analysis of multiple sequence alignments in PostScript.Bioinformatics, 1999
- Predicting conformational switches in proteinsProtein Science, 1999
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programsNucleic Acids Research, 1997
- Protein fold recognition by prediction-based threadingJournal of Molecular Biology, 1997
- Prediction of Protein Secondary Structure at Better than 70% AccuracyJournal of Molecular Biology, 1993
- Predicting Coiled Coils from Protein SequencesScience, 1991