Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. I. Changes in low-copy noncoding DNA sequences

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Abstract
We recently reported that allopolyploid formation in wheat was accompanied by rapid nonrandom elimination of specific low-copy, noncoding DNA sequences. These sequences occur in all diploid progenitors but are chromosome- or genome-specific at the polyploid level. To further investigate this phenomenon, we studied nine of these sequences, six chromosome-specific sequences and three genome-specific sequences, all isolated from common wheat. The various sequences were hybridized to DNA derived from nine newly synthesized amphiploids at different ploidy levels and to DNA from their parental lines. Although sequences homologous to the probes occur in all parental lines, a nonrandom loss of hybridization fragments was found at a high frequency in all amphiploids studied. In addition, a "loss/gain" of a hybridization fragment(s) was noticed in some of the amphiploids at lower frequency. Neither the type nor the frequency of changes was affected by intergenomic recombination or DNA methylation. It is suggested that rapid genomic changes culminated in a "programmed" pattern of elimination and (or) modification of specific low-copy DNA sequences following allopolyploidization. These events augmented the differentiation of homoeologous chromosomes, thus providing the physical basis for the diploid-like cytological behavior of polyploid wheat.Key words: wheat, allopolyploidy, genome evolution, chromosome- or genome-specific sequences, sequence elimination, homoeologous chromosome differentiation.