A novel and well-defined benchmarking method for second generation read mapping

This publication has 21 references indexed in Scilit:

• SHRiMP2: Sensitive yet Practical Short Read Mapping
  Bioinformatics, 2011
• A human gut microbial gene catalogue established by metagenomic sequencing
  Nature, 2010
• Targeted capture and massively parallel sequencing of 12 human exomes
  Nature, 2009
• Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
  Genome Research, 2009
• SOAP2: an improved ultrafast tool for short read alignment
  Bioinformatics, 2009
• Fast and accurate short read alignment with Burrows–Wheeler transform
  Bioinformatics, 2009
• Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming
  Nature Biotechnology, 2009
• Accurate whole human genome sequencing using reversible terminator chemistry
  Nature, 2008
• Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data
  Nature Methods, 2008
• The complete genome of an individual by massively parallel DNA sequencing
  Nature, 2008