Quantification and rationalization of the higher affinity of sodium over potassium to protein surfaces
- 17 October 2006
- journal article
- Published by Proceedings of the National Academy of Sciences in Proceedings of the National Academy of Sciences
- Vol. 103 (42) , 15440-15444
- https://doi.org/10.1073/pnas.0606959103
Abstract
For a series of different proteins, including a structural protein, enzyme, inhibitor, protein marker, and a charge-transfer system, we have quantified the higher affinity of Na+ over K+ to the protein surface by means of molecular dynamics simulations and conductivity measurements. Both approaches show that sodium binds at least twice as strongly to the protein surface than potassium does with this effect being present in all proteins under study. Different parts of the protein exterior are responsible to a varying degree for the higher surface affinity of sodium, with the charged carboxylic groups of aspartate and glutamate playing the most important role. Therefore, local ion pairing is the key to the surface preference of sodium over potassium, which is further demonstrated and quantified by simulations of glutamate and aspartate in the form of isolated amino acids as well as short oligopeptides. As a matter of fact, the effect is already present at the level of preferential pairing of the smallest carboxylate anions, formate or acetate, with Na+ versus K+, as shown by molecular dynamics and ab initio quantum chemical calculations. By quantifying and rationalizing the higher preference of sodium over potassium to protein surfaces, the present study opens a way to molecular understanding of many ion-specific (Hofmeister) phenomena involving protein interactions in salt solutions.Keywords
This publication has 32 references indexed in Scilit:
- Origins of Proton Transport Behavior from Selectivity Domain Mutations of the Aquaporin-1 ChannelBiophysical Journal, 2006
- Ion Permeation through a Narrow Channel: Using Gramicidin to Ascertain All-Atom Molecular Dynamics Potential of Mean Force Methodology and Biomolecular Force FieldsBiophysical Journal, 2006
- Molecular dynamics simulations of proteins in lipid bilayersCurrent Opinion in Structural Biology, 2005
- Computer simulations of membrane proteinsBiochimica et Biophysica Acta (BBA) - Biomembranes, 2004
- Negligible Effect of Ions on the Hydrogen-Bond Structure in Liquid WaterScience, 2003
- Effect of salts on the solubility of thermolysin: a remarkable increase in the solubility as well as the activity by the addition of salts without aggregation or dispersion of thermolysin.The Journal of Biochemistry, 1998
- Charge density-dependent strength of hydration and biological structureBiophysical Journal, 1997
- Cation selective promotion of tubulin polymerization by alkali metal chloridesProtein Science, 1996
- Phenomenological Theory of Ion Solvation. Effective Radii of Hydrated IonsThe Journal of Physical Chemistry, 1959
- Zur Lehre von der Wirkung der SalzeNaunyn-Schmiedebergs Archiv für experimentelle Pathologie und Pharmakologie, 1888