Bioinformatic analysis of the CLE signaling peptide family
Top Cited Papers
Open Access
- 3 January 2008
- journal article
- Published by Springer Nature in BMC Plant Biology
- Vol. 8 (1) , 1
- https://doi.org/10.1186/1471-2229-8-1
Abstract
Plants encode a large number of leucine-rich repeat receptor-like kinases. Legumes encode several LRR-RLK linked to the process of root nodule formation, the ligands of which are unknown. To identify ligands for these receptors, we used a combination of profile hidden Markov models and position-specific iterative BLAST, allowing us to detect new members of the CLV3/ESR (CLE) protein family from publicly available sequence databases.Keywords
This publication has 64 references indexed in Scilit:
- The TIGR Plant Transcript Assemblies databaseNucleic Acids Research, 2006
- TheFLORAL ORGAN NUMBER4Gene Encoding a Putative Ortholog of Arabidopsis CLAVATA3 Regulates Apical Meristem Size in RicePlant Physiology, 2006
- The Arabidopsis Unannotated Secreted Peptide Database, a Resource for Plant PeptidomicsPlant Physiology, 2006
- Silencing the Flavonoid Pathway in Medicago truncatula Inhibits Root Nodule Formation and Prevents Auxin Transport Regulation by RhizobiaPlant Cell, 2006
- The map-based sequence of the rice genomeNature, 2005
- CLANS: a Java application for visualizing protein families based on pairwise similarityBioinformatics, 2004
- WebLogo: A Sequence Logo Generator: Figure 1Genome Research, 2004
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programsNucleic Acids Research, 1997
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceNucleic Acids Research, 1994
- Inhibition of legume nodule formation and N2fixation by nitrateCritical Reviews in Plant Sciences, 1988