Ions and Counterions in a Biological Channel: A Molecular Dynamics Simulation of OmpF Porin from Escherichia coli in an Explicit Membrane with 1M KCl Aqueous Salt Solution
- 1 June 2002
- journal article
- Published by Elsevier in Journal of Molecular Biology
- Vol. 319 (5) , 1177-1197
- https://doi.org/10.1016/s0022-2836(02)00380-7
Abstract
No abstract availableKeywords
This publication has 70 references indexed in Scilit:
- Brownian dynamics simulation of ion flow through porin channelsJournal of Molecular Biology, 1999
- Continuum solvation model: Computation of electrostatic forces from numerical solutions to the Poisson-Boltzmann equationPublished by Elsevier ,1999
- Voltage and pH-induced channel closure of porin OmpF visualized by atomic force microscopy 1 1Edited by W. BaumeisterJournal of Molecular Biology, 1999
- All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of ProteinsThe Journal of Physical Chemistry B, 1998
- Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics programComputer Physics Communications, 1995
- Native Escherichia coli OmpF Porin Surfaces Probed by Atomic Force MicroscopyScience, 1995
- Refined Structure of the Porin from Rhodopseudomonas blastica: Comparison with the Porin from Rhodobacter capsulatusJournal of Molecular Biology, 1994
- Finite representation of an infinite bulk system: Solvent boundary potential for computer simulationsThe Journal of Chemical Physics, 1994
- Comparison of simple potential functions for simulating liquid waterThe Journal of Chemical Physics, 1983
- CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsJournal of Computational Chemistry, 1983