Quantitative assignment of reaction directionality in constraint-based models of metabolism: Application to Escherichia coli
- 1 September 2009
- journal article
- research article
- Published by Elsevier
- Vol. 145 (2-3) , 47-56
- https://doi.org/10.1016/j.bpc.2009.08.007
Abstract
No abstract availableKeywords
This publication has 74 references indexed in Scilit:
- A protocol for generating a high-quality genome-scale metabolic reconstructionNature Protocols, 2010
- Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coliNature Chemical Biology, 2009
- The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coliNature Biotechnology, 2008
- Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coliMolecular Systems Biology, 2007
- A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic informationMolecular Systems Biology, 2007
- Systems approach to refining genome annotationProceedings of the National Academy of Sciences, 2006
- A sensor for intracellular ionic strengthProceedings of the National Academy of Sciences, 2006
- Putative regulatory sites unraveled by network‐embedded thermodynamic analysis of metabolome dataMolecular Systems Biology, 2006
- Integrating high-throughput and computational data elucidates bacterial networksNature, 2004
- Optknock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimizationBiotechnology & Bioengineering, 2003